物理化学学报 >> 2009, Vol. 25 >> Issue (08): 1605-1610.doi: 10.3866/PKU.WHXB20090808

研究论文 上一篇    下一篇

腺嘌呤和质子化腺嘌呤的结构和振动光谱

梁晓静, 崔丽, 吴德印, 田中群   

  1. 固体表面物理化学国家重点实验室, 厦门大学化学化工学院化学系, 福建 厦门 361005
  • 收稿日期:2009-03-05 修回日期:2009-04-29 发布日期:2009-07-16
  • 通讯作者: 吴德印 E-mail:dywu@xmu.edu.cn

Structures and Vibrational Spectra of Adenine and Protonated Adenine

LIANG Xiao-Jing, CUI Li, WU De-Yin, TIAN Zhong-Qun   

  1. State Key Laboratory of Physical Chemistry of Solid Surfaces, Dopartment of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, Fujian Province, P. R. China
  • Received:2009-03-05 Revised:2009-04-29 Published:2009-07-16
  • Contact: WU De-Yin E-mail:dywu@xmu.edu.cn

摘要:

用密度泛函方法B3LYP/aug-cc-pVTZ分析了腺嘌呤和质子化腺嘌呤的低能稳定异构体的结构和振动光谱. 结果发现, 对于中性腺嘌呤分子, 腺嘌呤的异构体N9H比N7H的能量低32.76 kJ·mol-1(在极化连续模型下为6.28 kJ·mol-1). 基于标度量子力场方法所得到的势能分布, 对异构体N9H的部分振动基频重新进行了归属. 在极化连续模型下, 质子化腺嘌呤分子有5种低能稳定构型, 其中N1位质子化的9-位氢腺嘌呤最为稳定. 基于振动模式分析, 对这种最稳定构型的振动基频进行了归属, 并对腺嘌呤在pH=1的高氯酸溶液中的实验拉曼光谱进行了指认.

关键词: 腺嘌呤, 密度泛函理论, 振动光谱, 质子化腺嘌呤

Abstract:

The structures and vibrational spectra of neutral and protonated adenine molecules were calculated at the B3LYP/aug-cc-pVTZ level. For neutral adenine, the N9H adenine configuration is more stable in energy of about 32.76 kJ·mol-1 (6.28 kJ·mol-1 by using the polarization continuous model (PCM)) than N7H adenine. Based on the potential energy distribution (PED) calculated using the scaled quantummechanical field (SQMF) procedure, we corrected the assignments of some N9H adenine fundamental vibrations. There are five stable configurations for protonated adenine and the isomer of adenine that is protonated at the N1 position is the most stable. Based on vibration analysis, we assigned the fundamental vibrations of this configuration and analyzed the Raman spectra of adenine in the HClO4 (pH=1) solution.

Key words: Adenine, Density functional theory, Vibrational spectrum, Protonated adenine

MSC2000: 

  • O641