结构DNA纳米技术应用新进展

doi:10.3866/PKU.WHXB201704271

Abstract

Abstract:

DNA possesses extraordinary molecular recognition properties and remarkable structural features in the nano-level material regulation fields, which have shown enormous applications in many areas. In this review, we focus on DNA nanotechnology, including aspects ranging from modular DNA self-assembly to DNA origami, in addition to the recently reported novel assembly methods. Moreover, we summarize some applications of DNA nanotechnology, such as DNA-directed nanoparticle spatial positioning and orientation, and well-defined assembly of proteins on the DNA structure, as well as its uses, such as in the biomedical field, etc. The development and potential applications of DNA nanotechnology are also discussed.

Key words: DNA nanotechnology, Self-assembly, DNA module, DNA origami, Targeted drug delivery

Hong-Zhi ZHANG,Zhi-Qing ZHANG,Fang WANG,Ting ZHOU,Xiu-Feng WANG,Guo-Dong ZHANG,Ting-Ting LIU,Shu-Zhen LIU. Application of Structural DNA Nanotechnology[J]. Acta Phys. -Chim. Sin. 2017, 33(8), 1520-1532. doi: 10.3866/PKU.WHXB201704271

References

1	Watson J. D. ; Crick F. H. C. Nature 1953, 171 (4361), 737.
2	Zadegan R. M. ; Norton M. L. Int. J.Mol. Sci. 2012, 13 (6), 7149.
3	Seeman N. C. Annu. Rev. Biochem. 2010, 79 (79), 65.
4	Yang D. Y. ; Hartman M. R. ; Derrien T. L. ; Hamada S. ; An D. ; Yancey K. G. ; Cheng R. ; Ma M. L. ; Luo D. R. Acc. Chem. Res. 2014, 47 (6), 1902.
5	Lu C. H. ; Willner B. ; Willner I. ACS Nano 2013, 7 (10), 8320.
6	Suzuki Y. ; Endo M. ; Sugiyama H. ACS Nano 2015, 9 (4), 3418.
7	Aldaye F. A. ; Palmer A. L. ; Sleiman H. F. Science 2008, 321 (5897), 1795.
8	Harriman A. ; Kubo Y. J. ; Sessler L. J.Am. Chem. Soc. 1992, 114 (1), 388.
9	Tan S. J. ; Campolongo M. J. ; Luo D. ; Cheng W. L. Nat.Nanotechnol. 2011, 6 (5), 268.
10	Zenk J. ; Tuntivate C. ; Schulman R.J. Am. Chem. Soc. 2016, 138 (10), 3346.
11	Zhang F. ; Nangreave J. ; Liu Y. ; Yan H. J.Am. Chem. Soc. 2014, 136 (32), 11198.
12	Chen J. H. ; Seeman N. C. Nature 1991, 350 (6319), 631.
13	Shih W. M. ; Quispe J. D. ; Joyce G. F. Nature 2004, 427 (6975), 618.
14	Goodman R. P. ; Heilemann M. ; Doose S. ; Erben C.M. ; Kapanidis A. N. ; Turberfield A. J. Nat.Nanotechnol. 2008, 3 (2), 93.
15	Aldaye F. A. ; Sleiman H. F. Angew.Chem. Int. Ed. 2006, 45 (14), 2204.
16	Aldaye F. A. ; Sleiman H. F. J.Am. Chem. Soc. 2007, 129 (14), 4130.
17	Aldaye F. A. ; Sleiman H. F. J.Am. Chem. Soc. 2007, 129 (44), 13376.
18	He Y. ; Ye T. ; Su M. ; Zhang C. ; Ribbe A.E. ; Jiang W. ; Mao C. D. Nature 2008, 452 (7184), 198.
19	Zhang C. ; Su M. ; He Y. ; Zhao X. ; Fang P. A. ; Ribbe A. E. ; Jiang W. ; Mao C. D. PNAS 2008, 105 (31), 10665.
20	Seeman N. C. J.Theor. Biol. 1982, 99 (2), 237.
21	Seeman N. C. Nature 2003, 421 (6921), 427.
22	Fu T. J. ; Seeman N. C. Biochemistry 1993, 32 (13), 3211.
23	Li X. J. ; Yang X. P. ; Qi J. ; Seeman N. C. J.Am. Chem. Soc. 1996, 118 (26), 6131.
24	Winfree E. ; Liu F. ; Wenzler L. A. ; Seeman N. C. Nature 1998, 394 (6693), 539.
25	Liu F. ; Ruojie Sha A. ; Seeman N. C. J.Am. Chem. Soc. 1999, 121 (5), 917.
26	Lin C. X. ; Liu Y. ; Rinker S. ; Yan H. Chem. Phys. Chem. 2006, 7 (8), 1641.
27	Labean T. H. ; Yan H. ; Kopatsch J. ; Liu F. R. ; Winfree E. ; Reif J. H. ; Seeman N. C. J.Am. Chem. Soc. 2000, 122 (9), 1848.
28	Reishus D. ; Shaw B. ; Brun Y. ; Chelyapov N. ; Adleman L. J. Am. Chem. Soc. 2005, 127 (50), 17590.
29	Mathieu F. ; Liao S. ; Kopatsch J. ; Wang T. ; Mao C. D. ; Seeman N. C. Nano. Lett. 2005, 5 (4), 661.
30	Yan H. ; Park S. H. ; Finkelstein G. ; Reif J. H. ; LaBean T. H. Science 2003, 301 (5641), 1882.
31	Liu D. G. ; Wang M. S. ; Deng Z. X. ; Walulu R. ; Mao C. D. J.Am. Chem. Soc. 2004, 126 (8), 2324.
32	He Y. ; Chen Y. ; Liu H. P. ; Ribbe A. E. ; Mao C. D. J.Am. Chem. Soc. 2005, 127 (35), 12202.
33	He Y. ; Tian Y. ; Ribbe A. E. ; Mao C. D. J.Am. Chem. Soc. 2006, 128 (50), 15978.
34	He Y. ; Tian Y. ; Chen Y. ; Deng Z. ; Ribbe A. E. ; Mao C.D. Angew Chem. Int. Ed. 2005, 44 (41), 6694.
35	Rothemund P. W. Nature 2006, 440 (7082), 297.
36	Castro C. E. ; Kilchherr F. ; Kim D. N. ; Shiao E. L. ; Wauer T. ; Wortmann P. ; Bathe M. ; Dietz H. Nat. Methods 2011, 88 (3), 221.
37	Lin C. X. ; Liu Y. ; Yan H. Biochemistry 2009, 48 (8), 1663.
38	Qian L. L. ; Wang Y. ; Zang Z. ; Zhao J. ; Pan D. ; Zhang Y. ; Liu Q. ; Fan C.H. ; Hu J. ; He L. Chin. Sci. Bull. 2006, 51 (24), 2973.
39	Andersen E. S. ; Dong M. ; Nielsen M. M. ; Jahn K. ; Lind-Thomsen A. ; Mamdouh W. ; Gothelf K. V. ; Besenbacher F. ; Kjems J. ACS Nano. 2008, 2 (6), 1213.
40	Andersen E. S. ; Dong M. ; Nielsen M. M. ; Jahn K. ; Subramani R. ; Mamdouh W. ; Golas M. M. ; Sander B. ; Stark H. ; Oliveira C. L. ; Pedersen J. S. ; Birkedal V. ; Besenbacher F. ; Gothelf K. V. ; Kjems J. Nature 2009, 459 (7243), 73.
41	Ke Y. ; Sharma J. ; Liu M. ; Jahn K. ; Liu Y. ; Yan H. Nano Lett. 2009, 9 (6), 2445.
42	Douglas S. M. ; Dietz H. ; Liedl T. ; Hogberg B. ; Graf F. ; Shih W. M. Nature 2009, 459 (7245), 414.
43	Han D. R. ; Pal S. ; Liu Y. ; Yan H. Nature Nano 2010, 5 (10), 712.
44	Han D. ; Pal S. ; Nangreave J. ; Deng Z. ; Liu Y. ; Yan H. Science 2011, 332 (6027), 342.
45	Tigges T. ; Heuser T. ; Tiwari R. ; Walther A. Nano Lett. 2016, 16 (12), 7870.
46	Pound E. ; Ashton J. R. ; Becerril H. A. ; Woolley A. T. Nano Lett. 2009, 9 (12), 4302.
47	Wei B. ; Dai M. ; Yin P. Nature 2012, 485 (7400), 623.
48	Ouyang X. Y. ; Li J. ; Liu H. J. ; Zhao B. ; Yan J. ; Ma Y. Z. ; Xiao S. J. ; Song S. P. ; Huang Q. ; Chao J. ; Fan C.H. Small 2013, 9 (18), 3082.
49	Dean F. B. ; Nelson J. R. ; Giesler T. L. ; Lasken R. S. J.Am. Chem. Soc. 2012, 134 (1), 146.
50	Schweitzer B. ; Roberts S. ; Grimwade B. ; Shao W. P. ; Wang M.J. ; Fu Q. ; Shu Q. P. ; Laroche I. ; Zhou Z. M. ; Tchernev V. T. ; Christiansen J. ; Velleca M. ; Kingsmore S. F. Nat. Biotechnol. 2002, 20 (4), 359.
51	Zheng H. ; Xiao M. ; Yan Q. ; Ma Y. ; Xiao S. J. J Am. Chem. Soc. 2014, 136 (29), 10194.
52	Wang X. ; Zhuang J. ; Peng Q. ; Li Y. D. Nature 2005, 437 (7055), 121.
53	Lim D. K. ; Jeon K. S. ; Hwang J. H. ; Kim H. ; Kwon S. ; Suh Y. D. ; Nam J. M. Nat. Nanotechnol. 2011, 6 (7), 452.
54	Lim D. K. ; Jeon K. S. ; Kim H. ; Nam J. M. ; Suh Y. D. Nat. Mater. 2010, 9 (1), 60.
55	Sawai Y. ; Takimoto B. ; Nabika H. ; Ajito K. ; Murakoshi K. J.Am. Chem. Soc. 2007, 129 (6), 1658.
56	S?nnichsen C. ; Reinhard B. M. ; Liphardt J. ; Alivisatos A.P. Nat. Biotechnol. 2005, 23 (6), 741.
57	Luk'yanchuk B. ; Zheludev N. I. ; Maier S. A. ; Halas N. J. ; Nordlander P. ; Giessen H. ; Chong C. T. Nat. Mater. 2010, 9 (9), 707.
58	Mayer K. M. ; Hafner J. H. Chem. Rev. 2011, 111 (6), 3828.
59	Ding B. Q. ; Deng Z. T. ; Yan H. ; Cabrini S. ; Zuckermann R.N. ; Bokor J. J.Am. Chem. Soc. 2010, 132 (10), 3248.
60	Pal S. ; Deng Z. ; Ding B. ; Yan H. ; Liu Y. Angew. Chem. Int. Ed. 2010, 49 (15), 2700.
61	Weller L. ; Thacker V. ; Herrmann L. ; Hemmig E. ; Lombardi A. ; Keyser U. ; Baumberg J. ACS Photonics 2016, 3 (9), 1589.
62	Shen X. ; Song C. ; Wang J. Y. ; Shi D. W. ; Wang Z. G. ; Liu N. ; Ding B. Q. J.Am. Chem. Soc. 2012, 134 (1), 146.
63	Urban M. J. ; Dutta P. K. ; Wang P. F. ; Duan X. Y. ; Shen X. B. ; Ding B. Q. ; Ke Y. G. ; Liu N. J.Am. Chem. Soc. 2016, 138 (17), 5495.
64	Wang P. F. ; Gaitanaros S. ; Lee S. ; Bathe M. ; Shih W. M. ; Ke Y. G. J. Am. Chem. Soc. 2016, 138 (24), 7733.
65	Shi D. W. ; Song C. ; Jiang Q. ; Wang Z. G. ; Ding B. Q. Chem. Commun. 2013, 49 (25), 2533.
66	Park S. H. ; Yin P. ; Liu Y. ; Reif J. H. ; LaBean T. H. ; Yan H. Nano Lett. 2005, 5 (4), 729.
67	Chhabra R. ; Sharma J. ; Ke Y. ; Liu Y. ; Rinker S. ; Lindsay S. ; Yan H. J.Am. Chem. Soc. 2007, 129 (34), 10304.
68	Ramakrishnan S. ; Subramaniam S. ; Stewart A. F. ; Grundmeier G. ; Keller A. ACS. Appl. Mater. Interfaces 2016, 8 (45), 31239.
69	Maeda H. ; Wu J. ; Sawa T. ; Matsumura Y. ; Hori K. J. Control Release 2000, 65 (1-2), 271.
70	Albanese A. ; Tang P. S. ; Chan W. C. Annu. Rev. Biomed. Eng. 2012, 14 (14), 1.
71	Farokhzad O. C. ; Langer R. ACS Nano. 2009, 3 (1), 16.
72	Kim C. K. ; Ghosh P. ; Rotello V. M. Nanoscale 2009, 1 (1), 61.
73	Zhan P. ; Jiang Q. ; Wang Z. G. ; Li N. ; Yu H. ; Ding B. Q. Chem. Med. Chem. 2014, 9 (9), 2013.
74	Voigt N. V. ; T?rring T. ; Rotaru A. ; Jacobsen M. F. ; Ravnsbaek J.B. ; Subramani R. ; Mamdouh W. ; Kjems J. ; Mokhir A. ; Besenbacher F. ; Gothelf K. V. Nat. Nanotechnol 2010, 5 (3), 200.
75	Rusling D. A. ; Chandrasekaran A. R. ; Ohayon Y. P. ; Brown T. ; Fox K. R. ; Sha R. ; Mao C. D. ; Seeman N. C. Angew. Chem. Int. Ed. Engl. 2014, 53 (15), 3979.
76	Wei B. Y. ; Dai M. J. ; Yin P. Nature 2012, 485 (7400), 623.
77	Chang M. ; Yang C. S. ; Huang D. M. ACS Nano. 2011, 5 (8), 6156.
78	Lee H. ; Lytton-Jean A. K. ; Chen Y. ; Love K. T. ; Park A. I. ; Karagiannis E.D. ; Sehgal A. ; Querbes W. ; Zurenko C. S. ; Jayaraman M. ; Peng C. G. ; Charisse K. ; Borodovsky A. ; Manoharan M. ; Donahoe J. S. ; Truelove J. ; Nahrendorf M. ; Langer R. ; Anderson D. G. Nat. Nanotechnol. 2012, 7 (6), 389.
79	Zhang Z. Q. ; Ali M. M. ; Eckert M. A. ; Kang D. K. ; Chen Y.Y. ; Sender L. S. ; Fruman D. A. ; Zhao W. A. Biomaterials 2013, 34 (37), 9728.
80	Jiang Q. ; Song C. ; Nangreave J. ; Liu X. W. ; Lin L. ; Qiu D.L. ; Wang Z. G. ; Zou G. Z. ; Liang X. J. ; Yan H. ; Ding B. Q. J.Am. Chem. Soc. 2012, 134 (32), 13396.
81	Bhatia D. ; Surana S. ; Chakraborty S. ; Koushika S. P. ; Krishnan Y. Nat. Commun. 2011, 2 (2), 339.
82	Jiang D. W. ; Sun Y. H. ; Li J. ; Li Q. ; Lv M. ; Zhu B. ; Tian T. ; Cheng D. F. ; Xia J. Y. ; Zhang L. ; Wang L. H. ; Huang Q. ; Shi J. Y. ; Fan C. H. ACS. Appl. Mater. Interfaces 2016, 8 (7), 4378.
83	Mallikaratchy P. R. ; Ruggiero A. ; Gardner J. R. ; Kuryavyi V. ; Maguire W. F. ; Heaney M. L. ; McDevitt M. R. ; Patel D. J. ; Scheinberg D. A. Nucleic. Acids. Res. 2011, 39 (6), 2458.
84	Yang L. ; Meng L. ; Zhang X. ; Chen Y. ; Zhu G. ; Liu H. ; Xiong X. ; Sefah K. ; Tan W. J.Am. Chem. Soc. 2011, 133 (34), 13380.
85	Peer D. ; Karp J. M. ; Hong S. ; Farokhzad O. C. ; Margalit R. ; Langer R. Nat.Nanotechnol. 2007, 2 (12), 751.
86	Liu Z. ; Duan J. H. ; Song Y. M. ; Ma J. ; Wang F. D. ; Lu X. ; Yang X. D. J. Transl. Med. 2012, 10 (1), 1.
87	Xu W. ; Siddiqui I. A. ; Nihal M. ; Pilla S. ; Rosenthal K. ; Mukhtar H. ; Gong S. Biomaterials 2013, 34 (21), 5244.
88	Hubbell J. A. ; Chilkoti A. Science 2012, 337 (6092), 303.
89	Keefe A. D. ; Pai S. ; Ellington A. Nat. Rev. Drug. Discov. 2010, 9 (7), 537.
90	Bagalkot V. ; Farokhzad O. C. ; Langer R. ; Jon S. Angew. Chem. Int. Ed. 2006, 45 (48), 8149.
91	Huang Y. F. ; Shangguan D. ; Liu H. ; Phillips J. A. ; Zhang X. ; Chen Y. ; Tan W. ChemBioChem 2009, 10 (5), 862.
92	Ray P. ; White R. R. Pharmaceuticals 2010, 3 (6), 1761.
93	Thiel K. Nat. Biotechnol. 2004, 22 (6), 649.
94	Zhang Z. Q. ; Eckert M. A. ; Ali M. M. ; Liu L. ; Kang D. K. ; Chang E. ; Pone E. J. ; Sender L. S. ; Fruman D. A. ; Zhao W.A. ChemBioChem 2014, 15 (9), 1268.
95	Li J. ; Pei H. ; Zhu B. ; Liang L. ; Wei M. ; He Y. ; Chen N. ; Li D. ; Huang Q. ; Fan C. H. ACS Nano 2011, 5 (11), 8783.
96	Liu X. W. ; Xu Y. ; Yu T. ; Clifford C. ; Liu Y. ; Yan H. ; Chang Y. Nano Lett. 2012, 12 (8), 4254.
97	Yan H. ; Park S. H. ; Finkelstein G. ; Reif J. H. ; LaBean T. H. Science 2003, 301 (5641), 1882.
98	Liu D. ; Park S. H. ; Reif J. H. ; LaBean T. H. PNAS 2004, 101 (3), 717.
99	Ke Y. G. ; Lindsay S. ; Chang Y. ; Liu Y. ; Yan H. Science 2008, 319 (5860), 180.
100	Ke Y. G. ; Nangreave J. ; Yan H. ; Lindsay S. ; Liu Y. Chem. Commun. 2008, 43 (43), 5622.
101	Voigt N. V. ; T?rring T. ; Rotaru A. ; Jacobsen M. F. ; Ravnsbaek J. B. ; Subramani R. ; Mamdouh W. ; Kjems J. ; Mokhir A. ; Besenbacher F. ; Gothelf K. V. Nat. Nanotechnol. 2010, 5 (3), 200.
102	Wang Z. G. ; Liu Q. ; Li N. ; Ding B. Q. Chem. Mater. 2016, 28 (23), 8834.

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Application of Structural DNA Nanotechnology

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